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The use of DNA testing has been focused primarily on biological samples such as blood or saliva found at crime scenes. These types of evidence in the forensic field are sometimes difficult to come by, especially when there is no body to find to verify things such as identity or

The use of DNA testing has been focused primarily on biological samples such as blood or saliva found at crime scenes. These types of evidence in the forensic field are sometimes difficult to come by, especially when there is no body to find to verify things such as identity or status of a person. In the case of the burial of a body, they can be remote and relocated multiple times depending on each situation. Clandestine burials are not uncommon especially in the Arizona desert by the United States and Mexico border. Since there is no physical body to find the next best avenue to finding a clandestine burial is through search teams which can take weeks to months or other expensive technology such as ground penetrating radar (GPR). A new more interesting avenue to search for bodies is using the most found material–soil. Technology has allowed the possibility of using soil DNA microbiome testing initially to study the varieties of microbes that compose in soil. Microbiomes are unique and plentiful and essentially inescapable as humans are hosts of millions of them. The idea of a microbiome footprint at a crime scene seems out of reach considering the millions of species that can be found in various areas. Yet it is not impossible to get a list of varieties of species that could indicate there was a body in the soil as microbiomes seep through from decomposition. This study determines the viability of using soil microbial DNA as a method of locating clandestine graves by testing 6 different locations of a previous pig decomposition simulation. These two locations give two different scenarios that a body may be found either exposed to the sun in an open field or hidden under foliage such as a tree in the Sonoran Desert. The experiment will also determine more factors that could contribute to a correlation of microbiome specific groups associated with decomposition in soil such as firmicutes. The use of soil microbial DNA testing could open the doors to more interpretation of information to eventually be on par with the forensic use of biological DNA testing which could potentially supplement testimonies on assumed burial locations that occurs frequently in criminal cases of body relocation and reburial.
ContributorsMata Salinas, Jennifer (Author) / Marshall, Pamela (Thesis director) / Bolhofner , Katelyn (Committee member) / Wang, Yue (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor) / School of Humanities, Arts, and Cultural Studies (Contributor)
Created2022-05
Description

Triple Negative Breast Cancer (TNBC), indicated by the absence of estrogen, progesterone and human epidermal growth factor receptor 2 (HER2), is the most aggressive form of breast cancer characterized by high rates of metastasis and low survival. Among those diagnosed with TNBC, 34% contain Inhibitor of Growth 4 (ING4) deletion

Triple Negative Breast Cancer (TNBC), indicated by the absence of estrogen, progesterone and human epidermal growth factor receptor 2 (HER2), is the most aggressive form of breast cancer characterized by high rates of metastasis and low survival. Among those diagnosed with TNBC, 34% contain Inhibitor of Growth 4 (ING4) deletion that is associated with poor patient outcomes. We previously showed that ING4 negatively regulates NF-B in breast cancer. Previous studies show parthenolide, a compound found in feverfew (Tanacetum parthenium) to inhibit NF-B in cervical and gastric cancer. We hypothesized that parthenolide inhibits cytokine-induced activation of NF-B in ING4 deficient TNBC cells. To test the hypothesis, previously established vectors, v2, ING4 wildtype and v2h1, ING4-deleted were synthesized in MDA-MB 231, a TNBC cell line, using a CRISPR/Cas9 system. Inflammatory cytokines, IL-1 and TNF, were tested in ING4 wildtype or ING4 deleted cells for elicited phosphorylation of NF-B, proliferation, and migration in the presence or absence of parthenolide. The results showed that TNF or IL-1 induced translocation phosphorylation of NF-B regardless of ING4 deletion. ING4 inhibited proinflammatory cytokine induced pp65, consistent with previous studies demonstrating the negative regulation of NF-B in ING4-sufficent cell lines. We found the optimal working dose of parthenolide, 100nM, had no effect on cell proliferation in the presence or absence of IL-1. Parthenolide inhibited IL-1induced phosphorylation of NF-B regardless of ING4 deletion. Parthenolide inhibited TNF-induced phosphorylation of NF-B in ING4-deleted cell lines. Moreover, parthenolide induced migration of TNBC cells regardless of ING4 presence of absence. TNF and parthenolide treated samples in ING4-deleted cell lines were found to inhibit cell migration to basal level. These results demonstrate the difference in inhibitory mechanism of parthenolide in induced phosphorylation of NF-B through proinflammatory cytokines TNF or IL-1This is demonstrated by the exclusivity of parthenolide inhibition of TNF induced phosphorylation of NF-B in ING4-deleted TNBC cell line. In contrast, parthenolide inhibition of IL-1 induced phosphorylation of NF-B occurred regardless of ING4 deletion. These results may inhibit parthenolide as an alternative to those with ING4-deleted TNBC due to its role in inducing cancer phenotype cell migration.

ContributorsPedroza, Morgan Arielle (Author) / Kim, Suwon (Thesis director) / Wagner, Carl (Thesis director) / Bussey, Kimberly (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2021-12
Description

This thesis utilizes GIS mapping to analyze the severity of four threats: ocean acidification, sea surface temperature, artisanal fishing, and destructive fishing, in conjunction with coral species distribution. This project produced maps that depicts each of these threats and shows the distribution of its severity. Compiling this data we can

This thesis utilizes GIS mapping to analyze the severity of four threats: ocean acidification, sea surface temperature, artisanal fishing, and destructive fishing, in conjunction with coral species distribution. This project produced maps that depicts each of these threats and shows the distribution of its severity. Compiling this data we can see that ocean acidification is the most pressing threat in the Caribbean to coral and that neither type of fishing really has a large effect. A species named Madracis carmabi is also flagged to be of particular concern as it is severely threatened by both ocean acidification and sea surface temperature.

Created2021-05
Description

The purpose of this study was to determine the feasibility of a mindfulness-based intervention among pregnant women (12-20 weeks’ gestation) using a mobile meditation app, Calm. This study involved 100 participants who were recruited nationally due to the COVID-19 pandemic. This study was reviewed and approved by the Institutional Review

The purpose of this study was to determine the feasibility of a mindfulness-based intervention among pregnant women (12-20 weeks’ gestation) using a mobile meditation app, Calm. This study involved 100 participants who were recruited nationally due to the COVID-19 pandemic. This study was reviewed and approved by the Institutional Review Board of Arizona State University (STUDY STUDY00010467). All participants were provided an informed consent document and provided electronic consent prior to enrollment and participation in this study. This study was a randomized, controlled trial (trial registration: ClinicalTrials.gov NCT04264910). Participants randomized to the intervention group were asked to participate in a minimum of 10 minutes of daily meditation using a mindfulness meditation mobile app (i.e., Calm) for the duration of their pregnancy. Participants randomized to the standard of care control group were given access to the app after they gave birth. Both the intervention and control groups were administered surveys that measured feasibility outcomes, perceived stress, mindfulness, self-compassion, impact from COVID-19, pregnancy-related anxiety, depression, emotional regulation, sleep, and childbirth experience at four time points: baseline (12-20 weeks gestation), midline (24 weeks gestation), postintervention (36 weeks gestation), and follow-up survey (3-5 weeks postpartum). Data is currently being analyzed for publication.

ContributorsLister, Haily (Author) / Huberty, Jennifer (Thesis director) / Larkey, Linda (Committee member) / School of Mathematical and Natural Sciences (Contributor) / Barrett, The Honors College (Contributor)
Created2021-05
Description

Not only is Tyrosine one of the 20 amino acids that make proteins, but its catabolism also has many branches including a pathway that can be found in humans. Any mutations in the enzymes of this pathway can cause many disorders in humans including hereditary tyrosinemia type I. For this

Not only is Tyrosine one of the 20 amino acids that make proteins, but its catabolism also has many branches including a pathway that can be found in humans. Any mutations in the enzymes of this pathway can cause many disorders in humans including hereditary tyrosinemia type I. For this reason, understanding how tyrosine gets degraded in humans can help in developing therapies against disorders of the human tyrosine catabolism pathway. In this work, we explored what type of enzymes do microbes that reside within humans (the human microbiome) have to degrade tyrosine and how we can take advantage of the enzymes of the human microbiome for the betterment of human health and physiology.

ContributorsToy, Amber (Author) / Shah, Dhara (Thesis director) / Shrivastava, Abhishek (Committee member) / Krajmalnik-Brown, Rosa (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2021-12
Description

Throughout the year I had the opportunity to work on a business venture that utilized dendrites as a unique identifier. Dendrites themselves are completely unique, random, branching structures that occur everywhere in nature. This creative project was inspired by the shape of the dendrite and I created a series of

Throughout the year I had the opportunity to work on a business venture that utilized dendrites as a unique identifier. Dendrites themselves are completely unique, random, branching structures that occur everywhere in nature. This creative project was inspired by the shape of the dendrite and I created a series of 12 paintings reflecting on my own unique college journey.

ContributorsMann, Abigail (Author) / Trujillo, Rhett (Thesis director) / Reeves, James (Committee member) / Barrett, The Honors College (Contributor) / School of Humanities, Arts, and Cultural Studies (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2022-05
Description
This memoir will be delivered in parts, beginning with the statistical data behind addiction, followed by memories of my life that exacerbated my alcohol use disorder. A painted picture of my existence will lead into the final part of gathered resources to help yourself or others who may struggle with

This memoir will be delivered in parts, beginning with the statistical data behind addiction, followed by memories of my life that exacerbated my alcohol use disorder. A painted picture of my existence will lead into the final part of gathered resources to help yourself or others who may struggle with addiction. I plan to bring insight and education from an addict's point of view. I feel exposed as I write and peel back the deepest layers of what has consumed me for many years. Bringing my inner self to the light is helping me gain confidence in my sobriety. This being said, I am not special. I am not the first student to suffer from addiction and I, unfortunately, will not be the last. My hope is that you, or others in your life, through my story, can gain the confidence that you need to achieve control of the life you always wanted to live. Even though you have an addiction, addiction does not have you, as more than 23 million United States adults struggle with addiction to drugs or alcohol.
ContributorsSantiago, Candice (Author) / Watrous, Lisa (Thesis director) / Arce, Alma (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor) / School of Social and Behavioral Sciences (Contributor)
Created2022-05
Description

Aboveground-belowground relationships between vegetation and its associated soil biotic community play an important role in every terrestrial ecosystem for nutrient cycling and soil health maintenance. Deserts are especially sensitive to change and little is known about Sonoran Desert soil microbiota, while exotic herbaceous species are increasingly invading into the ecosystem

Aboveground-belowground relationships between vegetation and its associated soil biotic community play an important role in every terrestrial ecosystem for nutrient cycling and soil health maintenance. Deserts are especially sensitive to change and little is known about Sonoran Desert soil microbiota, while exotic herbaceous species are increasingly invading into the ecosystem with other harmful effects. In many other environments, soil communities have been associated with both plant species and plant functional type. The soil community food web depends on the sustenance brought by vegetation, and different soil community members are adapted to different diets. In this paper, we hypothesized that invasive plants would cause belowground soil communities to have greater abundance and lesser diversity than those under native, more locally established plants. To test this hypothesis, we selected four desert understory plant taxa: one native grass, one native forb, one invasive grass, and one invasive forb. We predicted that the invasive plants would be associated with a greater count of microarthropods per unit mass of soil but lesser microarthropod species diversity. The invasive plants were not statistically associated with a greater count of microarthropods per kilogram of soil nor lesser microarthropod species diversity. There was not a significant difference in abundance in the microarthropod categories between native and invasive plants, so the hypothesis was rejected. However, the invasive Erodium cicutarium was found to harbor high soil mite abundance, which warrants further study, and it is yet to be seen whether soil moisture and proximity to trees played a role in the data. The results of this study should help in generating more informed hypotheses regarding desert aboveground-belowground relationships.

ContributorsStern, Argon (Author) / Ball, Becky (Thesis director) / Sanin, Maria (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2022-05
Description
Bloodstain Pattern Analysis and Toxicology are important aspects of Forensic Science in determining what occurred at a crime scene. There are limited studies done on the effects of drugs on blood spatter found at crime scenes. Since drugs can have different effects on the body, the blood would be affected

Bloodstain Pattern Analysis and Toxicology are important aspects of Forensic Science in determining what occurred at a crime scene. There are limited studies done on the effects of drugs on blood spatter found at crime scenes. Since drugs can have different effects on the body, the blood would be affected by these drugs. Visine and Aspirin were chosen to be incorporated into sheep’s blood due to their common use in the general population. Contaminated blood was deposited onto several common surfaces alongside controls. The results were compared to the control and the secondary control, DI water added to blood, using a two-sample t-test. Many of the results came back as significant including the secondary control compared to the control group. Therefore the significance of the results cannot be linked directly back to the substances themselves, but to the water in addition to the substance added. Future studies could be done with higher concentrations of drugs, with the metabolites of drugs, and with different drugs, licit and illicit.
ContributorsWedel, Sydnee (Author) / Parrott, Jonathan (Thesis director) / Weidner, Lauren (Committee member) / Barrett, The Honors College (Contributor) / School of Mathematical and Natural Sciences (Contributor) / School of Criminology and Criminal Justice (Contributor)
Created2022-05
Description
Forensic entomology is the use of insects in legal investigations, and relies heavily upon calculating the time of colonization (TOC) of insects on remains using temperature-dependent growth rates. If a body is exposed to temperatures that exceed an insect’s critical limit, TOC calculations could be severely affected. The determination of

Forensic entomology is the use of insects in legal investigations, and relies heavily upon calculating the time of colonization (TOC) of insects on remains using temperature-dependent growth rates. If a body is exposed to temperatures that exceed an insect’s critical limit, TOC calculations could be severely affected. The determination of critical thermal limits of forensically-relevant insects is crucial, as their presence or absence could alter the overall postmortem interval (PMI) calculation. This study focuses on the larvae of Phormia regina (Meigen) (Diptera: Calliphoridae), a forensically relevant blow fly common across North America. Three populations were examined (Arizona, Colorado, and New Jersey), and five day old larvae were exposed to one of two temperatures, 39℃ or 45℃, for five hours. Across all colonies, the survival rate was lower at 45℃ than 39℃, in both larval and emerged adult stages. The Arizona colony experienced a harsher drop in survival rates at 45℃ than either the Colorado or New Jersey colonies. This research suggests that the range of 39℃ - 45℃ approaches the critical thermal limit for P. regina, but does not yet exhibit a near or complete failure of survivorship that a critical temperature would cause at this duration of time. However, there is opportunity for further studies to examine this critical temperature by investigating other temperatures within the 39℃ - 45℃ range and at longer durations of time in these temperatures.
ContributorsMcNeil, Tara (Author) / Weidner, Lauren (Thesis director) / Meeds, Andrew (Committee member) / Barrett, The Honors College (Contributor) / School of Humanities, Arts, and Cultural Studies (Contributor) / School of Mathematical and Natural Sciences (Contributor)
Created2022-05